dr-cook

Orchestrate academic research pipelines across literature review, writing, and analysis.

7|1|Updated Mar 9, 2026
One-click install
npx skills add https://github.com/wen-chen/dr-cook --skill dr-cook
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: dr-cook
Source: https://github.com/wen-chen/dr-cook/tree/main
Command: npx skills add https://github.com/wen-chen/dr-cook --skill dr-cook

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

Dr. Cook is a modular AI skill suite for academic researchers. It orchestrates end-to-end research tasks—ranging from literature review and gap analysis to manuscript writing, peer review, and bioinformatics analysis—without requiring users to re-enter context between steps. By loading SKILL.md frontmatter instructions and domain-specific references, it enables reproducible pipelines in bilingual English/Chinese contexts.

Core Features & Use Cases

  • 16 independent modules that can run standalone or be chained into pipelines.
  • A central router class that classifies intent and loads the correct module automatically.
  • A standardized context_output data contract that preserves context across modules, so users don’t have to paste content repeatedly.
  • Preset pipelines for common workflows (grant writing, manuscript submission, reviews) and free-form custom module sequences.
  • Domain-aware defaults and bilingual support for English/Chinese input.
  • Direct module invocation (dr-cook:<module>) to bypass the router when needed.
  • Easy installation: clone into Claude Code skills directory and start using immediately.

Quick Start

  1. Clone the repository into Claude Code’s skills directory.
  2. Use the top-level command dr-cook to see available modules and pipelines, or invoke a specific module like dr-cook:paper-writer.

Frequently Asked Questions about dr-cook

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate literature review and manuscript writing without re-entering context in Claude Code?

Academic research workflows can be automated using a modular AI skill suite that preserves context across stages. It loads domain-specific references to chain literature reviews, gap analysis, and manuscript writing without re-entering context.

Can I run bioinformatics data analysis and grant writing pipelines in a bilingual environment?

Bilingual bioinformatics data analysis and grant writing pipelines are supported natively. The suite provides domain-aware defaults for English and Chinese inputs, enabling reproducible end-to-end research automation.

How to chain multiple academic research modules into a custom pipeline?

To chain academic research modules, use the central router to classify intent and load modules automatically. A standardized context_output data contract passes information between stages, allowing custom module sequences for grant writing or manuscript submission.

Does this modular research workflow suite require specific dependencies or external libraries?

This modular research workflow suite requires no external dependencies. You simply clone the repository into the Claude Code skills directory to install and start orchestrating end-to-end research tasks immediately.

What is the best way to bypass the router and invoke a specific module for peer review?

The best way to bypass the router for peer review is direct module invocation. You can call specific modules like dr-cook:paper-writer directly to execute targeted academic tasks without automatic intent classification.

Why does context need to be preserved across different academic research stages?

Context must be preserved across academic research stages to prevent manual data re-entry between literature reviews, gap analysis, and writing. A shared context schema enables pipeline automation and ensures consistent sum of context retention.