drug-discovery

Search ChEMBL compounds and query OpenFDA for drug interactions.

1|1|Updated May 9, 2026
One-click install
npx skills add https://github.com/ldzhhxx/Hermes_offline_v2 --skill drug-discovery-ldzhhxx
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: drug-discovery
Source: https://github.com/ldzhhxx/Hermes_offline_v2/tree/main/hermes-agent/optional-skills/research/drug-discovery
Command: npx skills add https://github.com/ldzhhxx/Hermes_offline_v2 --skill drug-discovery-ldzhhxx

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires curl, python3, python3-Pillow, python3-cffi, python3-dateutil, python3-dev, python3-requests, python3-semantic-version, python3-setuptools, python3-typing-extensions, python3 wheel, python3.9.6, wheel, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill solves the complexities involved in pharmaceutical research and drug discovery by providing an easy-to-use tool that automates searches, calculations, and interactions.

Core Features & Use Cases

  • Bioactive Compound Search: Find bioactive compounds in ChEMBL with no API key required.
  • Drug-Likeness Calculation: Assess drug-likeness using Lipinski's Rule of Five and Veber's Oral Bioavailability Rules.
  • Drug Interaction & Safety Lookup: Research potential drug interactions and adverse events via OpenFDA.
  • ADMET Profiles Interpretation: Understand absorption, distribution, metabolism, excretion, and toxicity profiles.
  • Lead Optimization: Assist in the optimization of lead compounds for further research.

Quick Start

Search for bioactive compounds in ChEMBL targeting EGFR with the command: 'run drug-discovery search-target "EGFR"'

Frequently Asked Questions about drug-discovery

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search for bioactive compounds in ChEMBL for a specific drug target?

Search bioactive compounds in ChEMBL by specifying a target like EGFR in a simple command-line query. This automated pharmaceutical research task requires no API key and returns matching compound data directly for further drug discovery analysis.

Can I calculate drug-likeness using Lipinski's Rule of Five and Veber's rules?

Calculate drug-likeness by evaluating compounds against Lipinski's Rule of Five and Veber's Oral Bioavailability Rules. This automated analysis provides immediate feedback on whether a compound meets the criteria for oral bioavailability in pharmaceutical research.

What's the best way to look up drug interactions and adverse events via OpenFDA?

Look up drug interactions and adverse events by querying the OpenFDA database through curl and Python scripts. This approach automates safety and interaction research, retrieving relevant adverse event data without manual API navigation.

Do I need an API key to perform pharmaceutical research and compound searches?

No API key is required to search for bioactive compounds in ChEMBL. The drug discovery automation handles external API requests seamlessly via curl, so you can execute pharmaceutical research tasks without prior external service registration.

Does this drug discovery tool work with Python3 and curl for ADMET profiles interpretation?

Yes, this drug discovery tool requires Python3 and curl to interpret ADMET profiles. It leverages various Python libraries for data manipulation to analyze absorption, distribution, metabolism, excretion, and toxicity profiles of pharmaceutical compounds.

How to automate lead optimization tasks for bioactive compounds?

Automate lead optimization by combining compound search results, drug-likeness calculations, and ADMET profiles. The tool processes these pharmaceutical research parameters through Python scripts to assist in optimizing lead compounds for further development.

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