drug-discovery

Query ChEMBL, PubChem, OpenFDA, and OpenTargets to summarize drug discovery data.

1|Updated Jan 31, 2026
One-click install
npx skills add https://github.com/Monjyu1101/AiDiy2026 --skill drug-discovery-monjyu1101
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: drug-discovery
Source: https://github.com/Monjyu1101/AiDiy2026/tree/main/backend_hermes/optional-skills/research/drug-discovery
Command: npx skills add https://github.com/Monjyu1101/AiDiy2026 --skill drug-discovery-monjyu1101

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

Pharmaceutical research is often slowed by scattered data sources and manual interpretation. This Skill automates gathering open-source data and interpreting results to accelerate medicinal chemistry workflows.

Core Features & Use Cases

  • Target search & bioactivity exploration: Query ChEMBL targets and fetch top bioactive compounds.
  • Molecule property evaluation: Retrieve molecular properties from PubChem and assess Lipinski Violation (Ro5) and Veber rules.
  • Safety screening & interactions: Look up drug interactions via OpenFDA and screen for potential safety signals using OpenTargets for target-disease associations.
  • Use Case: A medicinal chemist can rapidly shortlist candidate molecules for synthesis by combining ChEMBL bioactivity, PubChem properties, and safety signals in a single workflow.

Quick Start

Start by asking for a target and a chemical name to fetch initial candidates and property summaries.

Frequently Asked Questions about drug-discovery

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate drug discovery data retrieval from public chemistry databases?

Drug discovery data retrieval is automated by querying free public APIs like ChEMBL, PubChem, and OpenFDA to fetch target bioactivity, molecular properties, and safety signals without authentication. Results are summarized to support medicinal chemistry decisions.

How do I check Lipinski and Veber rules for a molecule using PubChem?

To check Lipinski and Veber rules, the Skill retrieves molecular properties from PubChem and evaluates them against Rule of Five and Veber parameters. This assesses drug-likeness and oral bioavailability to help shortlist candidate molecules for synthesis.

Can I screen drug interactions and safety signals without API keys?

Yes, you can screen drug interactions and safety signals without API keys. The Skill queries OpenFDA for drug interactions and OpenTargets for target-disease associations using free public APIs that require no authentication for access.

How do I find bioactive compounds for a drug target in ChEMBL?

Finding bioactive compounds in ChEMBL involves querying a specified drug target to fetch top bioactive molecules. The Skill automates this target search and bioactivity exploration to accelerate pharmaceutical research workflows.

What is the best way to integrate bioactivity and property data for candidate selection?

Integrating bioactivity and property data for candidate selection is done by combining ChEMBL bioactivity results, PubChem molecular properties, and OpenFDA safety signals in a single workflow. This consolidated approach supports rapid shortlisting of candidate molecules for medicinal chemistry decisions.

Does this drug discovery Skill work for end-to-end medicinal chemistry workflows?

Yes, the Skill supports end-to-end medicinal chemistry workflows by covering target search, molecule property evaluation, and safety screening. It retrieves data, performs basic analytics, and provides decision support across the entire drug discovery process.