drug-sensitivity-for-gene
CommunityLink gene activity to drug response.
Data & Analytics#pharmacogenomics#gene-expression#biomarker#drug-sensitivity#DepMap#PRISM#cancer-research
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Correlates a gene's expression or dependency with drug sensitivity data across a panel of cancer cell lines to identify drugs whose efficacy is linked to the gene, supporting biomarker-driven therapy and mechanistic insights.
Core Features & Use Cases
- Pairwise correlation analysis between a gene vector and each drug sensitivity profile across cell lines to reveal pharmacogenomic associations.
- Biomarker discovery for patient stratification and synthetic lethal strategies.
- Publish-ready outputs including a TSV of correlations, scatter plots, and a concise summary report for interpretation.
Quick Start
Run the analysis for a gene symbol to generate correlations, plots, and a summary report.
Dependency Matrix
Required Modules
pandasnumpymatplotlibscipy
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: drug-sensitivity-for-gene Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#drug-sensitivity-for-gene Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.