enrichment-ora
CommunityFind enriched pathways from gene lists using ORA.
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
ORA helps researchers determine whether their gene lists show significant enrichment in known biological pathways or gene sets, enabling faster interpretation of omics data.
Core Features & Use Cases
- Over-Representation Analysis: Fisher's exact test to identify enriched pathways from a user-provided gene list.
- Flexible gene sets: Supports KEGG, Reactome, MSigDB Hallmark, WikiPathways, and GO databases via gseapy.
- Real-world use case: Given a list of DE genes from an experiment, obtain enriched pathways to interpret biological themes.
Quick Start
Run an ORA on your gene list to identify significantly enriched pathways and view results, then inspect adata.uns['ora_results'] for results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: enrichment-ora Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#enrichment-ora Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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