ensembl-database

Ensembl REST API retrieval automates fetching DNA, transcript, and protein sequences for genes across 250+ vertebrate species. The Skill handles rate limiting and retry logic to reliably query sequences by gene symbol or Ensembl ID without manual API management.

Gene lookup by symbol queries Ensembl to return matching genes with their assembly coordinates, IDs, and locations. The Skill supports both gene symbol and Ensembl ID searches, automatically handling batch queries and robust error handling for reliable results.

Ensembl comparative genomics data includes orthologs, paralogs, regulatory features, and variant predictions via VEP across 250+ species. The Skill automates retrieval of this data with batch querying and coordinate conversion between genome assemblies like GRCh37 and GRCh38.

Assembly mapping through Ensembl REST API converts coordinates between genome builds like GRCh37 and GRCh38. The Skill automates this coordinate conversion with built-in retry logic and error handling to ensure accurate cross-assembly lookups.

Ensembl VEP variant predictions analyze variant effects across 250+ species using the REST API. The Skill implements batch querying, rate limiting, and robust error handling to enable reliable programmatic access to variant consequence data.

Batch querying with built-in rate limiting and retry logic prevents API throttling during large-scale genomic data retrieval. The Skill automates these safeguards so you can reliably query gene lookups, sequences, variants, and comparative data without manual rate management.