epitopeprediction

What problem does it solve?

This Skill helps you run the nf-core epitopeprediction workflow without having to memorize release-specific flags, required inputs, or tool-specific settings. It turns a complex immunology analysis pipeline into a guided, reproducible run.

Core Features & Use Cases

• Variant-driven epitope discovery: Predict candidate epitopes from variants, proteins, or peptides for downstream analysis.
• Release-aware execution: Use the pinned pipeline version or select a specific historical release when reproducibility matters.
• Validated parameters and outputs: Work from a schema-checked samplesheet, required input and output paths, and a documented parameter reference.
• Research scenarios: Support neo-epitope generation, binding hotspot scans, and immunopeptidomics-style peptide prediction.

Quick Start

Ask the assistant to run the epitopeprediction Skill on my samplesheet and save the results to my chosen output directory.