Generate protein sequences, predict structures, and create embeddings with ESM models.
npx skills add https://github.com/sanand0/scientific-research --skill esm-sanand0
Please help me install this Agent Skill. Skill: esm Source: https://github.com/sanand0/scientific-research/tree/main/.claude/skills/esm Command: npx skills add https://github.com/sanand0/scientific-research --skill esm-sanand0
This Skill empowers researchers and developers to design novel proteins, predict their structures, and generate embeddings for downstream analysis, streamlining complex bioinformatics workflows.
Use the esm skill to generate a protein sequence for the provided structure file 'target.pdb'.
High-intent search queries and answers about installing and using this skill.
Generate high-quality protein embeddings for classification and similarity search using the ESM C model. You can run the model locally or use the Forge API to produce representations suitable for downstream machine learning tasks.
Yes, you can perform inverse folding to design protein sequences for a given 3D structure. The Skill uses state-of-the-art generative models to create candidate sequences that fold into the target structure.
Predict 3D protein structures directly from amino acid sequences using the ESM generative models. The Skill facilitates structure prediction through local execution or scalable cloud-based inference via the Forge API.
Design novel enzymes by using the ESM3 generative model to create candidate protein sequences with desired functions. You can then predict their structures and generate embeddings for functional analysis.
You can use either local model execution or cloud-based inference via the Forge API for protein sequence generation. Local execution supports direct analysis while the Forge API provides scalable solutions for larger tasks.
Generative protein design requires validating candidate sequences for actual catalytic activity and structural stability. The Skill generates predictions and embeddings, but experimental verification of the designed proteins remains necessary.
NVIDIA-BioNeMoDesign protein sequences for PDB backbones using ProteinMPNN via NVIDIA NIM.
LeonChaoXGenerate and complete protein sequences with ESM3 multimodal generation.
jimmc414Generate protein sequences and extract embeddings using ESM3 and ESM C.
hxk622Generate protein sequences and structures with ESM3 and embeddings with ESM C.
