Analyze and manipulate phylogenetic trees using Python's ete3 library.
npx skills add https://github.com/crazymsn/academic-skills --skill etetoolkit-crazymsn
Please help me install this Agent Skill. Skill: etetoolkit Source: https://github.com/crazymsn/academic-skills/tree/main/academic-skills/etetoolkit Command: npx skills add https://github.com/crazymsn/academic-skills --skill etetoolkit-crazymsn
Phylogenetic analysis often requires manual handling of tree topology, annotations, and visualizations across multiple tools; ETE Toolkit consolidates these tasks into a single Python toolkit for end-to-end phylogenetic workflows.
Load a tree using PhyloTree and render a basic figure to PDF.
High-intent search queries and answers about installing and using this skill.
ETE toolkit renders phylogenetic trees into publication-ready figures using rectangular and circular layouts, faces, and legends. It handles tree IO, manipulation, and visualization for gene and species trees in a single Python workflow.
Detecting evolutionary events on a phylogenetic tree is handled through ETE classes like PhyloTree and ClusterTree, which enable tree traversal and evolutionary event detection across gene and species trees.
You can integrate NCBI taxonomy data with phylogenetic tree analysis using the NCBITaxa class, enabling taxonomy integration, alignment linking, and topology building for comprehensive phylogenomic pipelines.
Yes, you need Python and the ete3 library installed to analyze tree topology and manipulate branches. The Skill uses ETE classes like Tree and PhyloTree for traversal and manipulation.
Using a Python toolkit for phylogenetic analysis consolidates manual handling of tree topology, annotations, and visualization across multiple tools into a single end-to-end workflow for evolutionary insights.
tassiovaleAnalyze phylogenetic trees with evolutionary event detection and NCBI taxonomy integration.
pur3v4d3rAutomates phylogenetic tree analysis and visualization using the ETE toolkit.
ovachieverManipulate and analyze phylogenetic trees in Newick, NHX, PhyloXML, and NeXML formats.
hxk622Analyze and manipulate phylogenetic trees in Newick and NHX formats.
