exploratory-data-analysis

Detect scientific data file formats and generate structured Markdown reports.

Updated Apr 14, 2026
One-click install
npx skills add https://github.com/dotruru/claudemd --skill exploratory-data-analysis-dotruru
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: exploratory-data-analysis
Source: https://github.com/dotruru/claudemd/tree/main/skills/exploratory-data-analysis
Command: npx skills add https://github.com/dotruru/claudemd --skill exploratory-data-analysis-dotruru

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires biopython, numpy, pandas, h5py, Pillow, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

The Exploratory Data Analysis skill automates the detection, interpretation, and reporting of scientific data files across 200+ formats, delivering consistent metadata extraction and actionable insights without manual routine.

Core Features & Use Cases

  • Automatic file-type detection and format-specific metadata extraction across chemistry, bioinformatics, imaging, spectroscopy, proteomics, and general science datasets.
  • Markdown report generation with data quality metrics, statistical summaries, and downstream analysis recommendations.
  • Reference-informed analysis workflow that loads format references and produces a structured summary for documentation and planning.

Quick Start

Run the analyzer on a sample data file to generate an eda report.

Frequently Asked Questions about exploratory-data-analysis

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automatically detect scientific data file formats and generate an analysis report?

You can automate scientific data file detection and generate an analysis report by running an exploratory data analysis workflow that identifies 200+ formats via extensions, extracts metadata, and outputs a structured Markdown report with statistical summaries and quality metrics.

What is the best way to extract metadata from unknown spectroscopy or proteomics data files?

The best way to extract metadata from unknown spectroscopy or proteomics files is using a reference-informed analysis workflow that auto-detects the file type, applies format-specific analyzers, and produces a standardized summary for documentation and downstream planning.

Can I use pandas and numpy to perform exploratory data analysis on microscopy and bioinformatics datasets?

Yes, you can use pandas and numpy for exploratory data analysis on microscopy and bioinformatics datasets, as these dependencies support the built-in analyzers that extract format-specific metadata and compute statistical summaries across scientific domains.

Does exploratory data analysis support common chemistry and biology file formats like HDF5?

Exploratory data analysis supports common chemistry and biology file formats including HDF5, leveraging the h5py dependency to detect file types, extract metadata, and generate standardized Markdown reports with data quality metrics and downstream analysis recommendations.

What are the limitations of automated file-type detection for scientific data files?

Automated file-type detection for scientific data files relies on extension-based lookup and reference matching, so limitations arise when files have missing, incorrect, or unrecognized extensions, potentially preventing format-specific analyzers from running and extracting metadata.

How do I generate a Markdown report with data quality metrics for scientific datasets?

You generate a Markdown report with data quality metrics for scientific datasets by running an automated exploratory data analysis process that identifies file formats, extracts metadata, computes statistical summaries, and outputs actionable downstream analysis recommendations.