exploratory-data-analysis

Detect scientific file formats and generate markdown EDA reports with quality metrics.

203|27|Updated Apr 19, 2026
One-click install
npx skills add https://github.com/franklee16/academic-research-skills --skill exploratory-data-analysis-franklee16
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: exploratory-data-analysis
Source: https://github.com/franklee16/academic-research-skills/tree/main/data-analysis/exploratory-data-analysis
Command: npx skills add https://github.com/franklee16/academic-research-skills --skill exploratory-data-analysis-franklee16

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) and assets (resource) components.

What problem does it solve?

It eliminates the time-consuming work of manually inspecting unknown scientific datasets by automatically detecting file types, extracting structure-specific metadata, and assessing data quality before analysis.

Core Features & Use Cases

  • Automatic file type detection (200+ formats): Identifies the scientific data format from a provided file path and selects the correct interpretation.
  • Format-specific quality and characteristics: Extracts metadata and computes quality metrics tailored to the detected domain (chemistry, genomics, microscopy, spectroscopy, proteomics/metabolomics, and general scientific formats).
  • Actionable markdown report generation: Produces a detailed, documentation-ready EDA markdown report including recommended downstream analysis steps.

Quick Start

Use exploratory-data-analysis to analyze your dataset by providing the file path to the scientific data file (for example, a FASTQ, CSV, ND2, or mzML file) and request an EDA markdown report.

Frequently Asked Questions about exploratory-data-analysis

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I perform exploratory data analysis on an unknown scientific file format?

To perform exploratory data analysis on an unknown scientific file, this Skill automatically detects over 200 formats and extracts structure-specific metadata. It assesses data quality and distributions, generating a comprehensive markdown EDA report for planning downstream processing.

Can I automatically detect file types and extract metadata for microscopy and bioinformatics datasets?

Yes, you can automatically detect file types and extract metadata for microscopy and bioinformatics datasets. The Skill identifies formats across domains like genomics and proteomics, computing tailored quality metrics to help you understand dataset integrity.

What is the best way to generate an EDA report for scientific data without manual inspection?

The best way to generate an EDA report without manual inspection is using an automated exploratory data analysis tool. This Skill detects the scientific format, evaluates quality metrics, and outputs a documentation-ready markdown report with recommended next analyses.

Does this exploratory data analysis tool support quality metrics for proteomics and metabolomics files?

Yes, this exploratory data analysis tool supports quality metrics for proteomics and metabolomics files. It detects specific scientific formats within these domains, extracts relevant structural metadata, and evaluates data integrity to guide your downstream analysis planning.

How do I assess data integrity and structure for an unfamiliar scientific dataset?

To assess data integrity and structure for an unfamiliar scientific dataset, this Skill performs format-aware exploratory data analysis. It automatically identifies the file type, extracts characteristics, and computes quality metrics to reveal dataset distributions and potential issues.

What are the limitations of automated file type detection for scientific data formats?

The limitations of automated file type detection for scientific data formats depend on format specificity and metadata availability. While it supports over 200 scientific formats, highly proprietary or corrupted files may limit accurate detection and the extraction of comprehensive quality metrics.