exploratory-data-analysis

Detect scientific file formats and generate Markdown EDA reports.

1|Updated Apr 4, 2026
One-click install
npx skills add https://github.com/m0at/claudemd --skill exploratory-data-analysis-m0at
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: exploratory-data-analysis
Source: https://github.com/m0at/claudemd/tree/main/skills/exploratory-data-analysis
Command: npx skills add https://github.com/m0at/claudemd --skill exploratory-data-analysis-m0at

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires numpy, pandas, biopython, Pillow, h5py, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

The Exploratory Data Analysis (EDA) skill automates detection of file types, extracts format-specific metadata, assesses data quality, and generates comprehensive Markdown reports to guide downstream analysis across 200+ scientific formats.

Core Features & Use Cases

  • Automatic file-type detection and category assignment
  • Format-specific metadata extraction and basic QC
  • Markdown report generation with recommendations for downstream analysis
  • Use Case: An analyst drops a data file to get a ready-to-share EDA report, including data quality metrics and recommended next steps.

Quick Start

Run the EDA analyzer on a sample data file to generate a structured markdown report.

Frequently Asked Questions about exploratory-data-analysis

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate exploratory data analysis for scientific data files?

You can automate exploratory data analysis by detecting file formats, extracting metadata, and generating structured Markdown findings reports. This process applies format-specific references to assess data quality and recommend downstream steps across 200+ scientific formats.

Can I generate an EDA report across multiple scientific formats like microscopy and spectroscopy?

Yes, automated EDA supports multi-format datasets across chemistry, biology, microscopy, spectroscopy, proteomics, and metabolomics. It assigns categories, extracts format-specific metadata, and produces a ready-to-share Markdown report with quality metrics.

What's the best way to extract metadata and assess data quality for unknown scientific formats?

The best way to extract metadata is using an automated EDA analyzer that detects file types, loads format-specific references, and performs lightweight data analysis. This generates a structured report with basic QC and actionable recommendations.

Does exploratory data analysis support large scientific datasets with sample-based analysis?

Yes, exploratory data analysis handles large scientific datasets by applying sample-based analysis when possible. This allows the analyzer to extract basic metadata and perform lightweight data analysis without loading entire datasets into memory.

Do I need pandas and h5py to run automated EDA on biological and chemistry data?

Yes, automated EDA on biological and chemistry data requires dependencies including pandas, numpy, biopython, h5py, and Pillow. These libraries enable file detection, format-specific metadata extraction, and lightweight data analysis across scientific formats.

Why does my EDA report show incomplete metadata for certain scientific data files?

Incomplete metadata in an EDA report may occur when the file format is not fully recognized or when format-specific references lack details for certain data structures. The analyzer applies sample-based analysis to extract basic metadata where possible.