extraction-form

Extract study data from research papers into a structured CSV table.

497|38|Updated Jan 7, 2026
One-click install
npx skills add https://github.com/WILLOSCAR/research-units-pipeline-skills --skill extraction-form
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: extraction-form
Source: https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/extraction-form
Command: npx skills add https://github.com/WILLOSCAR/research-units-pipeline-skills --skill extraction-form

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill automates the extraction of study data from research papers into a structured CSV table, ensuring consistency and auditability for systematic reviews.

Core Features & Use Cases

  • Structured Data Extraction: Populates a CSV table with specific fields defined in a protocol.
  • Protocol Adherence: Ensures extracted data strictly follows the schema defined in output/PROTOCOL.md.
  • Use Case: After screening research papers for a systematic review, use this Skill to extract key information like study design, participant demographics, and outcome measures into a single, analysis-ready table.

Quick Start

Use the extraction-form skill to populate the extraction table from the screening log and protocol.

Frequently Asked Questions about extraction-form

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I extract study data from research papers into a structured CSV table?

To extract study data into a structured CSV table, use a predefined protocol schema that converts unstructured paper content into analysis-ready data. This process systematically populates specific fields like study design and demographics based on your included studies.

What is needed to automate data extraction for a systematic review?

Automating data extraction for a systematic review requires a screening log of included papers and a protocol file defining the exact extraction fields. These inputs ensure the structured output strictly follows your predefined schema for consistency.

Can I use a protocol schema to ensure consistent data extraction across multiple studies?

Yes, using a protocol schema ensures consistent data extraction across multiple studies. The process strictly follows the field definitions defined in your protocol file, converting unstructured research paper content into a standardized analysis-ready table.

Does structured data extraction work with a predefined screening log?

Structured data extraction works directly with a predefined screening log by using it to identify included research papers. It then processes these specific papers to populate your CSV table according to the defined protocol schema.

What is the best way to convert unstructured paper content into analysis-ready data?

The best way to convert unstructured paper content into analysis-ready data is through protocol-driven structured data extraction. This method automatically populates a CSV table with key information like outcome measures based on your predefined schema.