Parse FCS 2.0-3.1 flow cytometry files into event arrays and metadata.
npx skills add https://github.com/dralkh/seerai --skill flowio-dralkh
Please help me install this Agent Skill. Skill: flowio Source: https://github.com/dralkh/seerai/tree/main/skills/flowio Command: npx skills add https://github.com/dralkh/seerai --skill flowio-dralkh
This Skill removes the friction of reading and cleaning flow cytometry files, letting you inspect FCS metadata, extract event data, and prepare research datasets without manual parsing.
Use the flowio skill to read the attached FCS file, extract its metadata and event matrix, and return an analysis-ready summary with channel labels.
High-intent search queries and answers about installing and using this skill.
To parse FCS flow cytometry files into a DataFrame, use this Skill to read event matrices and extract metadata. It converts single or multi-dataset FCS 2.0-3.1 files directly into analysis-ready NumPy arrays or pandas DataFrames.
Extracting metadata and event data from multi-dataset FCS files involves handling offset discrepancies and null channels. This Skill robustly parses multi-dataset layouts, preserving acquisition metadata while converting events into clean arrays.
Yes, this FCS parsing method supports older flow cytometry file versions. It maintains full FCS 2.0, 3.0, and 3.1 compatibility while applying optional time, gain, and logarithmic transformations to the event data.
You can export extracted flow cytometry event data to CSV by first parsing the FCS file into a DataFrame. This Skill facilitates CSV or DataFrame export, allowing you to save clean analysis-ready tables for downstream research workflows.
FCS file parsing often fails due to offset discrepancies or null channels when standard readers cannot handle malformed headers. This Skill applies robust handling for these specific issues, accurately extracting event matrices without manual intervention.
Yes, you can inspect fluorescence channel names directly from an FCS file. This Skill allows you to review channel names, detect scatter or fluorescence signals, and validate acquisition metadata before extracting the event matrix.
Estrella-231Parse FCS 2.0–3.1 files to extract event data and metadata.
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Zeyuyang-0420Parses FCS files to extract metadata and event data for analysis.
ovachieverParse FCS 2.0, 3.0, and 3.1 files into NumPy arrays and metadata.
