Parse FCS files into NumPy arrays and extract channel metadata.
npx skills add https://github.com/felixboehm/biochem-allergy --skill flowio-felixboehm
Please help me install this Agent Skill. Skill: flowio Source: https://github.com/felixboehm/biochem-allergy/tree/main/.claude/skills/flowio Command: npx skills add https://github.com/felixboehm/biochem-allergy --skill flowio-felixboehm
This Skill simplifies the complex task of reading and processing Flow Cytometry Standard (FCS) files, enabling quick access to critical experimental data.
Use the flowio skill to read the file 'experiment.fcs' and print the number of events and channels.
High-intent search queries and answers about installing and using this skill.
To parse flow cytometry FCS files into NumPy arrays, use this Skill to read event data and extract experimental metadata. It handles FCS versions 2.0-3.1 and outputs structured NumPy arrays for downstream analysis.
When parsing FCS files, you can extract metadata including channel information, acquisition dates, and instrument details. This metadata is retrieved alongside event data to facilitate cytometry analysis.
Yes, this FCS file parser supports older flow cytometry data formats, specifically reading FCS versions 2.0 through 3.1. It handles common file parsing issues across these versions to extract event data.
You can batch process a directory of FCS files by using the Skill to extract event data from each file. It converts events into NumPy arrays, which can then be combined into a single dataset for analysis.
Common limitations when parsing FCS files involve handling version-specific parsing issues across different cytometry standards. This Skill addresses common file parsing errors for FCS versions 2.0-3.1 to ensure event data extraction.
RamanEbrahimiParse Flow Cytometry Standard (FCS) files into NumPy arrays and Pandas DataFrames.
ovachieverParse FCS 2.0, 3.0, and 3.1 files into NumPy arrays and metadata.
jaechang-hitsParses and generates Flow Cytometry Standard (FCS) files with NumPy arrays and channel metadata.
rubenslivParse FCS 2.0 to 3.1 files to extract event data and metadata.
