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freesurfer-tool

Official

Orchestrate FreeSurfer processing safely.

Education & Research#automation#workflow#neuroimaging#freesurfer#recon-all#cortical#MRI
AuthorCUHK-AIM-Group
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Automates end-to-end FreeSurfer processing for structural MRI data by providing a safe wrapper that verifies installation, validates inputs, builds an execution plan, and delegates all long-running commands to claw-shell, ensuring reproducible and auditable runs.

Core Features & Use Cases

  • Environment checks and installation planning via dependency-planner.
  • Input validation for MRI data and subject configuration.
  • Execution planning with exact shell commands and safety guardrails.
  • Post-execution verification and logging through harness-core.

Quick Start

Provide a structural MRI NIfTI file and a subject ID to initiate a planned FreeSurfer run, and confirm execution to hand off to claw-shell.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: freesurfer-tool
Download link: https://github.com/CUHK-AIM-Group/NeuroClaw/archive/main.zip#freesurfer-tool

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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