funcscan

What problem does it solve?

This Skill helps you run the nf-core/funcscan pipeline correctly without guessing flags, so you can screen assembled contigs and related sequence inputs for functional genes with reproducible, validated parameters.

Core Features & Use Cases

• End-to-end functional screening: Coordinates antimicrobial peptide, antibiotic resistance, biosynthetic gene cluster, and CAZyme screening workflows from one command.
• Release-pinned reproducibility: Uses the exact upstream pipeline release and documents the required inputs, outputs, and parameter constraints for dependable runs.
• Practical bioinformatics use case: Use it when you have a samplesheet of contigs, proteins, GFFs, or GBKs and need a consistent analysis run that produces module outputs plus a MultiQC summary.

Quick Start

Ask the assistant to run the funcscan skill on your samplesheet, choose the output directory, and execute the pipeline with the appropriate profile for your environment.