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gene-database

Query NCBI Gene database via E-utilities and Datasets API for gene annotations.

Updated Mar 10, 2026
Search Tags:#bioinformatics#genomics#ncbi#database query#annotation#gene
One-click install
npx skills add https://github.com/Yezez9/Research-Agent --skill gene-database-yezez9
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: gene-database
Source: https://github.com/Yezez9/Research-Agent/tree/main/scientific-skills/gene-database
Command: npx skills add https://github.com/Yezez9/Research-Agent --skill gene-database-yezez9

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill provides programmatic access to the NCBI Gene database, enabling users to retrieve comprehensive information about genes, their locations, functions, and associated data.

Core Features & Use Cases

  • Gene Search: Find genes by symbol, name, or associated diseases.
  • Data Retrieval: Fetch detailed gene information, including RefSeqs, GO annotations, and chromosomal locations.
  • Batch Processing: Efficiently look up multiple genes simultaneously.
  • Use Case: When analyzing genomic data, you can use this Skill to quickly find the official symbol, description, and chromosomal location for a list of gene IDs.

Quick Start

Use the gene-database skill to find gene information for the symbol 'BRCA1' in humans.

Frequently Asked Questions about gene-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I query the NCBI Gene database for gene-specific information?▼

To query the NCBI Gene database, this Skill uses E-utilities and the Datasets API to retrieve gene-specific information. You can search by symbol or ID to find official symbols, descriptions, and detailed annotations.

Can I perform a batch lookup for multiple genes simultaneously?▼

Yes, you can perform a batch lookup for multiple genes simultaneously. This Skill supports efficient batch processing to quickly retrieve annotations and functional analysis data for a list of gene IDs.

What gene annotations can I retrieve using NCBI E-utilities?▼

Using NCBI E-utilities, you can retrieve comprehensive gene annotations including RefSeqs, GO annotations, chromosomal locations, and official gene symbols for genomic data analysis.

Does this Skill support searching for genes by associated diseases?▼

Yes, this Skill supports searching for genes by symbol, name, or associated diseases. It queries the NCBI Gene database to find and retrieve detailed information based on your specific search criteria.

How do I find the chromosomal location for a list of gene IDs?▼

To find chromosomal locations for a list of gene IDs, use the batch processing feature to query the NCBI Gene database. It retrieves official symbols, descriptions, and precise chromosomal locations efficiently.

What is the best way to retrieve RefSeqs and GO annotations for a gene symbol like BRCA1?▼

The best way to retrieve RefSeqs and GO annotations for a gene symbol like BRCA1 is to query the NCBI Gene database via E-utilities. This Skill fetches detailed functional data directly from the source.

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