general-chemical-literature
OfficialMap molecules to PubMed and patent records
Education & Research#patents#drug discovery#data retrieval#pubmed#pubchem#novelty check#chemical informatics
Authorlearningmatter-mit
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Identifies whether a specific chemical compound is already covered by recent peer-reviewed literature or existing patents to support molecule novelty checks.
Core Features & Use Cases
- PubChem CID cross-reference retrieval: Pulls PubMed IDs and patent numbers associated with a compound via PubChem PUG-REST XRefs.
- Actionable verification output: Prints direct PubMed and Google Patents links for quick human review of top results.
- Safety cap for ubiquitous molecules: Limits the saved result arrays (default 1000) to prevent oversized outputs for high-hit compounds like Aspirin.
- Use Case: When evaluating a generated candidate molecule, fetch associated publication and patent identifiers to quickly gauge whether similar compounds have already been described or claimed.
Quick Start
Provide a PubChem CID and ask the skill to fetch and save its associated PubMed and patent cross-references.
Dependency Matrix
Required Modules
urllib.requesturllib.errorurllib.parsejsonargparsepathlibtimehttp.client
Components
scriptsassets
💻 Claude Code Installation
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Please help me install this Skill: Name: general-chemical-literature Download link: https://github.com/learningmatter-mit/AtomisticSkills/archive/main.zip#general-chemical-literature Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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