Guide genomics data analysis decisions for RNA-seq, microarray, and single-cell data.
npx skills add https://github.com/justaddcoffee/open-science-skills --skill genomics
Please help me install this Agent Skill. Skill: genomics Source: https://github.com/justaddcoffee/open-science-skills/tree/main/genomics Command: npx skills add https://github.com/justaddcoffee/open-science-skills --skill genomics
Genomics data analysis decisions can be complex due to multiple data types, evolving best practices, and the need for consistent interpretation across studies.
Use the genomics skill to structure your analysis plan for RNA-seq differential expression discovery.
High-intent search queries and answers about installing and using this skill.
Pathway enrichment and gene set enrichment analysis workflows are guided by structured templates that provide interpretation steps and best-practice reporting, ensuring consistent and reproducible results across different genomic studies.
Matching analytical strategies for genomics data types like microarray and single-cell requires guidance on data type characteristics, enabling the selection of appropriate workflows for bulk RNA-seq, microarray, and single-cell transcriptomics analyses.
Variant interpretation across different genomics studies can be performed using structured workflows that provide consistent analytical decisions, best-practice guidance, and reproducible example templates to inform the interpretation process.
Genomics data analysis requires consistent interpretation across multiple data types due to evolving best practices and the complexity of applying appropriate analytical strategies to bulk RNA-seq, microarray, and single-cell transcriptomics data.
Reproducible example templates are needed to perform gene set enrichment analysis because they illustrate end-to-end workflows, interpretation steps, and result reporting, which directly support reproducible genomic analyses.
jaechang-hitsFilter, merge, annotate, and extract genetic variants in VCF and BCF files.
galeepIdentify over-represented pathways and gene sets in gene lists.
tassiovaleAnalyze gene lists or ranked data for enriched biological pathways and gene sets.
felixboehmQuery NCBI ClinVar for genetic variant clinical significance and pathogenicity.
