geo-database
CommunityDiscover GEO data with Python quickly.
Authorjackspace
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides practical approaches to access and retrieve GEO data (GSE, GSM, GPL) for transcriptomics and expression analysis using GEOparse and E-utilities.
Core Features & Use Cases
- GEO data organization: Understand GEO hierarchy (Series, Sample, Platform, DataSet)
- Search & fetch: Query GEO DataSets, GEO Profiles, and download files
- GEOparse usage: Load series, extract expression data, and access supplementary files
- E-utilities access: Programmatic GEO metadata retrieval via NCBI APIs
Quick Start
Use GEOparse to fetch a GSE, extract its expression matrix, and inspect sample metadata.
Dependency Matrix
Required Modules
GEOparseBiopython
Components
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: geo-database Download link: https://github.com/jackspace/ClaudeSkillz/archive/main.zip#geo-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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