Query over 20 bioinformatics databases via command-line and Python interfaces.
npx skills add https://github.com/hxk622/TokenDance --skill gget-hxk622
Please help me install this Agent Skill. Skill: gget Source: https://github.com/hxk622/TokenDance/tree/main/backend/app/skills/builtin/scientific/bioinformatics/gget Command: npx skills add https://github.com/hxk622/TokenDance --skill gget-hxk622
This Skill provides a unified command-line and Python interface to query over 20 bioinformatics databases, simplifying complex genomic and proteomic data retrieval and analysis.
Use the gget skill to search for gene information for 'TP53' in human.
High-intent search queries and answers about installing and using this skill.
To query bioinformatics databases for gene information and sequences, you can use a unified command-line and Python interface to retrieve data from over 20 sources like Ensembl and UniProt. This simplifies complex genomic data retrieval into simple commands.
Finding protein structures and performing sequence analysis is best handled by querying databases like RCSB PDB and UniProt. You can retrieve structural data and execute BLAST searches directly within your workflow to streamline proteomic research.
Yes, you can query gene expression data and perform enrichment analysis in Python by interfacing with databases like ARCHS4. This allows direct integration of expression data querying into biological research workflows.
To find disease associations for a specific gene, query databases like OpenTargets through a unified command-line interface. This facilitates rapid retrieval of known disease associations for drug discovery workflows.
Supported bioinformatics databases for genomic and proteomic data retrieval include Ensembl, UniProt, NCBI, RCSB PDB, ARCHS4, and OpenTargets. Over 20 databases are accessible for sequence analysis and structural prediction.
Yes, this tool works for drug discovery workflows and biological research by facilitating tasks such as gene information retrieval, sequence alignment, and enrichment analysis. It streamlines querying diverse biological databases.
robotlearning123Retrieve genomic data from the Ensembl REST API using Python.
Imad-OuteQuery Reactome pathways and perform enrichment analysis via REST API.
tassiovaleManipulate biological sequences, alignments, trees, and diversity metrics in Python.
felixboehmQuery 20+ bioinformatics databases and run sequence analysis from command line or Python.
