Retrieve and analyze bioinformatics data from multiple databases using gget.
npx skills add https://github.com/tassiovale/claude-code-kit --skill gget-tassiovale
Please help me install this Agent Skill. Skill: gget Source: https://github.com/tassiovale/claude-code-kit/tree/main/skills/gget Command: npx skills add https://github.com/tassiovale/claude-code-kit --skill gget-tassiovale
This Skill provides a comprehensive suite of bioinformatics tools for quick data retrieval and analysis, streamlining complex genomic and proteomic workflows.
Use the gget skill to retrieve gene information for 'ENSG00000169194' and view its protein structure in the PDB.
High-intent search queries and answers about installing and using this skill.
To retrieve gene expression data and disease associations for an Ensembl ID, query integrated databases like ARCHS4 for expression patterns and cBioPortal for disease visualization. This allows rapid analysis of gene-specific expression across different tissues.
Yes, you can perform BLAST sequence alignment and query protein structures simultaneously. The system integrates sequence similarity databases with the PDB and AlphaFold, enabling combined sequence analysis and structural protein predictions.
Available bioinformatics databases for rapid genomic and proteomic data retrieval span over 20 sources, covering genomic references, protein structures, sequence similarity, expression, disease, and drug targets. This integration streamlines complex workflows.
Yes, you need biopython and bioservices installed, along with the core gget package, to use this genomics data retrieval suite. These Python dependencies are required to execute the underlying analysis and database queries.
The best way to analyze gene expression patterns across different human tissues is to retrieve expression data from ARCHS4 and visualize the results using cBioPortal. This workflow provides comprehensive expression analysis for specific genes.
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