gnomad-database

Query gnomAD GraphQL API for allele frequencies and gene constraint metrics.

48|6|Updated Mar 9, 2026
One-click install
npx skills add https://github.com/qinyan-ai/qinyan-academic-skills --skill gnomad-database-qinyan-ai
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: gnomad-database
Source: https://github.com/qinyan-ai/qinyan-academic-skills/tree/main/skills/12-%E7%A7%91%E5%AD%A6%E6%95%B0%E6%8D%AE%E5%BA%93/gnomad-database
Command: npx skills add https://github.com/qinyan-ai/qinyan-academic-skills --skill gnomad-database-qinyan-ai

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill enables researchers and clinicians to access population allele frequencies and gene constraint metrics from gnomAD to support variant interpretation and research decisions.

Core Features & Use Cases

  • GraphQL API access to gnomAD datasets (gnomad_r4, genomes, etc.) to fetch allele frequencies and constraint scores.
  • Gene-level constraint scores and per-variant frequencies to support pathogenicity assessment and variant prioritization.
  • Ancestry- and population-specific frequencies to inform population genetics analyses.
  • Practical workflows for research and clinical interpretation using supplied references.

Quick Start

Query gnomAD data via the GraphQL API at https://gnomad.broadinstitute.org/api to retrieve gene frequencies and constraint metrics.

Frequently Asked Questions about gnomad-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I fetch gnomAD population allele frequencies for variant interpretation?

To fetch gnomAD population allele frequencies for variant interpretation, query the gnomAD GraphQL API at the Broad Institute endpoint to retrieve per-variant frequencies and gene constraint metrics across exome and genome datasets like gnomad_r4.

What are gnomAD constraint scores and when do I need them for pathogenicity assessment?

gnomAD constraint scores measure gene-level intolerance to loss-of-function or missense variation. You need these metrics during pathogenicity assessment and variant prioritization in rare-disease genetics research to identify constrained genes.

Can I retrieve ancestry-specific population frequencies from the gnomAD GraphQL API?

Yes, you can retrieve ancestry-specific population frequencies from the gnomAD GraphQL API. It exposes ancestry- and population-specific allele frequencies to inform population genetics analyses across datasets like gnomad_r4_genomes.

Does the gnomAD GraphQL API support both gnomad_r4 exome and genome datasets?

Yes, the gnomAD GraphQL API supports querying both gnomad_r4 and gnomad_r4_genomes datasets. This allows you to access comprehensive exome and genome population frequency data and constraint metrics for your research workflows.

What is the best way to query gene-level constraint metrics using GraphQL?

The best way to query gene-level constraint metrics is by using the supplied GraphQL querying templates to access the gnomAD API at gnomad.broadinstitute.org/api, fetching constraint scores directly for your targeted genes.