Generate and manage GenePattern modules for bioinformatics tools.
npx skills add https://github.com/genepattern/module-toolkit --skill gp-module
Please help me install this Agent Skill. Skill: gp-module Source: https://github.com/genepattern/module-toolkit/tree/main/skills/gp-module Command: npx skills add https://github.com/genepattern/module-toolkit --skill gp-module
This Skill enables the creation and management of GenePattern modules, turning bioinformatics tools into cloud-ready, production-ready GenePattern modules.
To generate a new GenePattern module, use the 'generate' command followed by the tool name and any specific parameters.
High-intent search queries and answers about installing and using this skill.
To create a GenePattern module, use the 'generate' command followed by the tool name and specific parameters. This automated module generation converts bioinformatics tools into cloud-ready, production-ready GenePattern modules within the ecosystem.
Yes, you need both Python and Docker to wrap bioinformatics tools for GenePattern. These dependencies are required to handle module generation, configuration, documentation, and testing for the bioinformatics tools.
The best way to configure parameters for a GenePattern module is through the Skill's configurable parameters feature, which allows you to customize inputs based on the specific requirements of the bioinformatics tool being wrapped.
Yes, you can generate test scripts and documentation when wrapping tools for GenePattern. The Skill provides comprehensive documentation and test scripts specifically designed for module validation during the creation process.
Automated module generation works by converting bioinformatics tools into GenePattern modules automatically. It handles the module generation, configuration, documentation, and testing required to integrate the tools into the GenePattern ecosystem.
fnf-ax-teamGenerate presentation decks from natural language prompts using generate_ppt.py.
genepatternGenerate wrapper scripts for GenePattern modules with language selection and parameter handling.
ovachieverManage DNAnexus data objects, jobs, apps, and workflows via dxpy.
SpagesticManage Docker containers, images, and volumes via command-line interface.
