graphify-windows

Builds a navigable knowledge graph from mixed folders with HTML and JSON exports.

Updated May 18, 2026
One-click install
npx skills add https://github.com/Noegnesis/noesis --skill graphify-windows-noegnesis
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: graphify-windows
Source: https://github.com/Noegnesis/noesis/tree/main/skills/graphify
Command: npx skills add https://github.com/Noegnesis/noesis --skill graphify-windows-noegnesis

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Graphify transforms messy collections of files into a structured knowledge graph you can navigate, query, and audit, so you stop re-reading the same materials and start seeing cross-document connections.

Core Features & Use Cases

  • Persistent graph outputs: Produces interactive HTML and GraphRAG-ready JSON that survive across sessions for later questioning.
  • Honest audit trail: Labels relationships as EXTRACTED, INFERRED, or AMBIGUOUS so you can trust what’s grounded versus speculative.
  • Community clustering + reporting: Detects clustered communities, generates an honest GRAPH_REPORT.md, and can export to GraphML/Neo4j or serve via MCP.

Quick Start

Run /graphify and let it build a complete graph from the current directory into graphify-out/ (HTML, graph.json, GRAPH_REPORT.md).

Frequently Asked Questions about graphify-windows

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I turn a folder of mixed files into a navigable knowledge graph?

You can build a knowledge graph from a folder by running graphify to extract entities, cluster communities, and export interactive HTML and GraphRAG JSON. It processes codebases, research collections, and personal folders using deterministic AST and agent-based semantic extraction.

How does an audit trail help me trust relationships in an extracted knowledge graph?

An audit trail labels every relationship as EXTRACTED, INFERRED, or AMBIGUOUS, allowing you to see exactly what is grounded versus speculative. This ensures you can trust the connections discovered across your files and verify the generated GRAPH_REPORT.md.

Can I export a generated knowledge graph to Neo4j or serve it via MCP?

Yes, after building a knowledge graph you can export the output to GraphML or Neo4j, or serve it directly via an MCP server. These persistent outputs survive across sessions for later querying and visualization.

Does graph clustering work on reading corpora and codebases with mixed file types?

Yes, the graph clustering works on codebases, reading corpora, and research collections by detecting communities across mixed file types. It optionally uses deep semantic mode and media transcription to process diverse inputs before generating clustered reports.

What is the best way to visualize a knowledge graph generated from local documents?

The best way to visualize a knowledge graph from local documents is through the generated interactive HTML output, which provides web-based navigation. You can also use the GraphRAG JSON export for integration with other web visualization tools.

How do I incrementally update a knowledge graph when files change in my directory?

You can use the incremental update feature to modify an existing knowledge graph when files change, avoiding a full rebuild. This applies deterministic AST extraction and agent-based semantic extraction only to new or updated materials before regenerating exports.