gsea_for_ranked_gene_list
CommunityPreranked GSEA with publication-ready plots.
Data & Analytics#bioinformatics#pathway-analysis#publication-ready#gsea#ranked-genes#gene-set-enrichment#prerank
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Preranked GSEA on a ranked gene list to produce enrichment results and publication-ready plots and tables.
Core Features & Use Cases
- Preranked gene set enrichment analysis using MSigDB libraries (HALLMARK, KEGG, REACTOME, GO_BP/GO_MF/GO_CC) for human or mouse.
- Generates full result tables, significant-result summaries, and downloadable plots suitable for publication.
- Supports input validation, automatic gene symbol normalization, and deterministic outputs.
Quick Start
Provide a ranked gene list file and run the script to generate GSEA results and plots.
Dependency Matrix
Required Modules
pandasnumpygseapy
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: gsea_for_ranked_gene_list Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#gsea-for-ranked-gene-list Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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