gwas-database

To find SNP-trait associations, query the GWAS Catalog by disease, trait, or gene to retrieve associated variants. You can search using trait identifiers like 'EFO_0001360' to locate all matching genetic associations and their relevant genomic data.

Retrieve p-values and effect sizes for a specific rs ID by querying the NHGRI-EBI GWAS Catalog. The Skill searches variants by their rs ID and returns summary statistics, providing the exact p-values and effect sizes for your genetic epidemiology research.

Yes, you can download or query full summary statistics for published GWAS. The Skill accesses the NHGRI-EBI GWAS Catalog to retrieve complete summary statistics, enabling downstream analysis and polygenic risk score development.

Yes, this Skill provides Python examples for integrating GWAS data retrieval. It utilizes REST APIs for data retrieval from the GWAS Catalog, supplying code examples to help you programmatically access SNP-trait associations and summary statistics.

The best way to query genomic data for polygenic risk score development is to search the GWAS Catalog for SNP-trait associations. You can retrieve necessary p-values, effect sizes, and full summary statistics by querying variants associated with your target trait.

Yes, you can search for genetic variants by gene name in the GWAS Catalog. The Skill enables users to search variants by rs ID, disease trait, or specific gene, retrieving all associated SNP-trait associations and their summary statistics.