hi-c-3d-genomics
CommunityAnalyze 3D genome structure from Hi-C data.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This workflow enables researchers to extract and interpret 3D genome organization signals from Hi-C data, transforming complex contact maps into actionable insights for downstream analysis and reporting.
Core Features & Use Cases
- Call and compare compartments, loops, and TADs from Hi-C contact maps across conditions and resolutions.
- Generate interpretable visualizations of contact maps and derived features for publication or reporting.
- Use Case: compare treated vs control samples to identify differential chromatin interactions and structural rearrangements.
Quick Start
Provide a processed Hi-C dataset (contacts or matrices) and run the 3D genomics workflow to generate compartments, loops, TADs, and visualizations.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: hi-c-3d-genomics Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#hi-c-3d-genomics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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