Extract informative tiles and detect tissue regions from whole slide images.
npx skills add https://github.com/jackspace/ClaudeSkillz --skill histolab
Please help me install this Agent Skill. Skill: histolab Source: https://github.com/jackspace/ClaudeSkillz/tree/main/skills/scientific-pkg-histolab Command: npx skills add https://github.com/jackspace/ClaudeSkillz --skill histolab
Histolab enables digital pathology workflows: extract tiles from gigapixel WSIs, detect tissue, generate masks, and prepare datasets for deep learning.
Install histolab and run a basic tile extraction on a sample slide.
High-intent search queries and answers about installing and using this skill.
Tile extraction from WSIs involves partitioning gigapixel pathology images into smaller regions for analysis. Histolab automates this using multiple strategies—Random, Grid, or Score-based selection—to generate datasets from SVS, TIFF, and NDPI formats compatible with deep learning pipelines.
Tissue detection and masking identify stained regions within WSIs, separating meaningful pathology data from background. Histolab applies automated tissue masking across multiple stain types and WSI formats to prepare clean inputs for downstream analysis.
Processing gigapixel WSIs requires handling pyramidal image structures and managing memory efficiently. Histolab provides slide management, metadata access, and tile extraction across formats to handle large-scale digital pathology workflows without loading entire images into memory.
WSI preprocessing requires compatibility across vendor formats. Histolab supports SVS, TIFF, and NDPI formats, enabling unified tile extraction and tissue analysis regardless of acquisition platform.
Dataset preparation for pathology ML involves tissue detection, tile selection, and format standardization. Histolab automates these preprocessing steps—masking tissue, extracting informative tiles, and managing slide metadata—to create analysis-ready datasets.
robinbarvaagProcess whole slide images and extract tissue tiles for deep learning datasets.
biomaps-infraAutomate tissue detection and tile extraction from whole slide images.
tassiovaleExtract and preprocess whole slide image tiles with tissue detection and stain normalization.
dralkhExtract and preprocess whole slide image tiles from histopathology slides.
