hmdb-skill

Retrieve biochemical data from HMDB via REST API requests.

Updated Aug 23, 2026
One-click install
npx skills add https://github.com/hanumin/Tumi-DentAI-ResearchNexus --skill hmdb-skill
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: hmdb-skill
Source: https://github.com/hanumin/Tumi-DentAI-ResearchNexus/tree/main/hermes-skills/hmdb
Command: npx skills add https://github.com/hanumin/Tumi-DentAI-ResearchNexus --skill hmdb-skill

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes scripts (resource) components.

What problem does it solve?

This Skill streamlines the process of obtaining succinct, relevant information on metabolites, proteins, diseases, and pathways from the Human Metabolome Database, saving researchers time.

Core Features & Use Cases

  • Targeted Database Queries: Performs precise searches for specific biochemical entities using HMDB endpoints.
  • Rapid Summarization: Provides concise markdown summaries that highlight key data points for quick review.
  • Use Case: A researcher wants a quick overview of a metabolite like serotonin — this Skill fetches a brief yet comprehensive summary suitable for literature review or experimental planning.

Quick Start

Use the HMDB skill to find summaries about the metabolite serotonin.

Frequently Asked Questions about hmdb-skill

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I retrieve biochemical summaries for metabolites like serotonin from HMDB?

To retrieve biochemical summaries for metabolites from HMDB, query the specific metabolite name to receive a concise markdown summary. The Skill formats REST API responses into key data points for rapid literature review or experimental planning.

What biomedical data types can I query using the Human Metabolome Database?

You can query the Human Metabolome Database for metabolite, protein, disease, and pathway information. The Skill performs targeted database queries using HMDB endpoints to extract relevant biochemical entities for biomedical research workflows.

Can I use requests to fetch disease and pathway information from HMDB?

Yes, you can use requests to fetch disease and pathway information from HMDB. The Skill utilizes REST requests to the HMDB API and formats responses into user-friendly markdown summaries for quick review of disease data.

What's the best way to get quick metabolite overviews for biomedical research?

The best way to get quick metabolite overviews is to query HMDB for rapid summarization. This provides concise markdown summaries highlighting key biochemical data points, saving researchers time during literature review.

Does this HMDB Skill provide detailed experimental data or concise summaries?

This HMDB Skill provides concise summaries rather than exhaustive experimental data. It retrieves detailed biochemical data and formats it into brief, user-friendly markdown summaries highlighting key data points suitable for quick review.

When do I need to query HMDB for metabolite and protein information?

You need to query HMDB for metabolite and protein information when your biomedical research workflows depend on accurate, rapid biochemical data. This is essential for literature reviews or experimental planning requiring quick overviews.