human-protein-atlas-database
OfficialFind protein expression and location in HPA.
Education & Research#bioinformatics#protein expression#human protein atlas#subcellular localization#gene to ensembl mapping#immunohistochemistry#scientific data retrieval
Authorgoogle-deepmind
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps you retrieve Human Protein Atlas (HPA) protein expression and spatial localization evidence for a protein using its Ensembl identifier, enabling protein-level biological insight beyond RNA expression alone.
Core Features & Use Cases
- Retrieve protein expression by tissue: Get semi-quantitative IHC-derived levels (High, Medium, Low, Not Detected) for normal tissues and cancer types.
- Identify subcellular localization: Determine where the protein is localized within cells (e.g., nucleus vs cytoplasm; specific organelles/structures).
- Support protein-level discovery workflows: Resolve gene symbols to Ensembl IDs, fetch full atlas metadata entries, and search for genes matching expression/localization criteria.
Quick Start
Use the skill to map ERBB2 to an Ensembl ID, then fetch its subcellular location for interpretation in a protein-focused research workflow.
Dependency Matrix
Required Modules
scienceskillscommon
Components
scriptsreferences
💻 Claude Code Installation
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Please help me install this Skill: Name: human-protein-atlas-database Download link: https://github.com/google-deepmind/science-skills/archive/main.zip#human-protein-atlas-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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