hypogenic

Generate and empirically test scientific hypotheses from tabular datasets using LLMs.

2|Updated Jun 4, 2026
One-click install
npx skills add https://github.com/Lord1Egypt/scientific-agent-toolkit --skill hypogenic-lord1egypt
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: hypogenic
Source: https://github.com/Lord1Egypt/scientific-agent-toolkit/tree/main/scientific-skills/hypogenic
Command: npx skills add https://github.com/Lord1Egypt/scientific-agent-toolkit --skill hypogenic-lord1egypt

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires uv, redis, s2orc-doc2json, grobid, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

This skill addresses the bottleneck of manual hypothesis formulation by using LLMs to systematically generate, refine, and test hypotheses against empirical datasets.

Core Features & Use Cases

  • Automated Hypothesis Generation: Create 10-20+ testable hypotheses from observational data in minutes.
  • Literature Integration: Synergistically combine theoretical insights from research papers with empirical data patterns.
  • Use Case: Researchers can use this to identify linguistic patterns in deception detection or mental health indicators by iteratively testing competing hypotheses against large datasets.

Quick Start

Use the hypogenic skill to generate and test hypotheses for the dataset located in the data directory using the configuration file config.yaml.

Frequently Asked Questions about hypogenic

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate scientific hypothesis generation using LLMs and tabular datasets?

Automate scientific hypothesis generation by using LLMs to systematically create and empirically test hypotheses against tabular datasets. This skill identifies data patterns to generate 10-20+ testable hypotheses in minutes, bypassing manual formulation bottlenecks.

How does literature-informed hypothesis refinement work with research paper PDFs?

Literature-informed hypothesis refinement uses GROBID to process research paper PDFs into structured text. The skill synergistically combines these extracted theoretical insights with empirical data patterns to iteratively test and refine competing hypotheses.

Do I need Redis and GROBID to run automated hypothesis testing on my data directory?

Yes, you need Redis for caching and GROBID for processing research literature PDFs to run automated hypothesis testing. You configure the testing process for your data directory using a config.yaml file to manage these dependencies.

Can I use LLMs to identify linguistic patterns in deception detection or mental health datasets?

Yes, you can use LLMs to identify linguistic patterns in deception detection or mental health datasets. The skill supports exploratory research by systematically benchmarking competing theories against large datasets to detect mental health indicators.

What is the difference between manual hypothesis formulation and systematic benchmarking of competing theories?

Manual hypothesis formulation relies on human intuition, whereas systematic benchmarking of competing theories uses LLMs to iteratively test hypotheses against empirical datasets. This automated approach generates and evaluates 10-20+ theories rapidly to ensure robust scientific discovery.

When should I not use LLMs for automated empirical testing of hypotheses?

You should not use LLMs for automated empirical testing of hypotheses if your research lacks tabular datasets for benchmarking or if you cannot integrate Redis and GROBID for caching and PDF literature processing.