hypothesis-generation

Generate testable scientific hypotheses with predictions, experiments, and LaTeX reports from observations.

Updated Oct 7, 2022
One-click install
npx skills add https://github.com/tamagusko/linux-cfg --skill hypothesis-generation-tamagusko
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: hypothesis-generation
Source: https://github.com/tamagusko/linux-cfg/tree/main/dotfiles/claude/skills/hypothesis-generation
Command: npx skills add https://github.com/tamagusko/linux-cfg --skill hypothesis-generation-tamagusko

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) and assets (resource) components.

What problem does it solve? Turning raw observations or preliminary data into rigorous, testable scientific hypotheses is slow and unstructured; this Skill applies a systematic scientific-method workflow to produce competing mechanistic hypotheses, falsifiable predictions, and publication-ready LaTeX reports. ## Core Features & Use Cases - Structured Hypothesis Workflow: Guides literature search (PubMed and web), evidence synthesis, generation of 3-5 competing hypotheses, and quality evaluation against testability, falsifiability, and parsimony criteria. - Experimental Design Planning: Proposes discriminating experiments with controls, sample sizes, and statistical approaches drawn from documented design patterns (RCTs, cohort studies, in vitro/in vivo, computational models). - LaTeX Report Generation: Produces a professional report using a custom style package with colored hypothesis, prediction, and comparison boxes, a 4-page main text, and comprehensive appendices targeting 50+ citations. - Use Case: A researcher observes an unexpected correlation between a biomarker and disease progression; the Skill searches the literature, formulates three competing mechanistic hypotheses, designs experiments to distinguish them, and compiles a formatted XeLaTeX report. ## Quick Start Ask the assistant to generate competing testable hypotheses with predictions and a LaTeX report from your experimental observations or dataset findings.

Frequently Asked Questions about hypothesis-generation

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate testable hypotheses from experimental observations?

Provide your observations or preliminary data, and the Skill runs a structured workflow: literature search, evidence synthesis, generation of 3-5 competing mechanistic hypotheses, quality evaluation, and formulation of falsifiable predictions with discriminating experiments.

What makes a good scientific hypothesis for research proposals?

A strong hypothesis is testable, falsifiable, parsimonious, and mechanistic, explaining how and why rather than just what. The Skill evaluates each hypothesis against these criteria using the framework in references/hypothesis_quality_criteria.md and documents strengths and weaknesses.

How do I compile the hypothesis report LaTeX template?

Compile with XeLaTeX or LuaLaTeX, not pdfLaTeX: run xelatex, then bibtex, then xelatex twice more. The hypothesis_generation.sty style file must be in the same directory, and it requires tcolorbox, xcolor, fontspec, natbib, and related packages.

Why does my LaTeX hypothesis box overflow off the page?

Tcolorbox environments do not break across pages automatically, so long content overflows. Insert \newpage before each hypothesis box, keep each box under 0.6 pages, and move detailed explanations into the appendices.

When should I use hypothesis-generation instead of scientific-brainstorming?

Use hypothesis-generation when you have concrete observations or data and need testable hypotheses with predictions and experimental designs. Use scientific-brainstorming for open-ended ideation, and hypogenic for automated LLM-driven hypothesis testing on datasets.