igv-reports
CommunityGenerate interactive HTML reports for genomic data
Authorsahuno
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the process of generating interactive HTML reports for genomic data, allowing users to view and analyze genomic regions offline.
Core Features & Use Cases
- Build Reports: Create self-contained HTML reports for genomic regions using BAM/VCF data, default annotation tracks, and custom tracks.
- Cohort Analysis: Generate reports for multiple samples in a cohort with a single command.
- Content Verification: Perform structural and content verification on generated reports to ensure data accuracy.
- Use Case: If you have a set of genomic samples with BAM/VCF data and want to generate interactive reports for each sample, this Skill can automate the process.
Quick Start
To generate an HTML report for a single sample, use the command:
python scripts/build_igvreports.py --genome hg38 --sites sites.hg38.bed --bam tumor.bam normal.bam --output report.hg38.html
Dependency Matrix
Required Modules
igv-reports>=1.16.0samtools
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: igv-reports Download link: https://github.com/sahuno/igv-reports-skill/archive/main.zip#igv-reports Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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