imaging-data-commons

Query idc-index metadata to retrieve public IDC imaging data.

321|26|Updated Mar 10, 2026
One-click install
npx skills add https://github.com/mkurman/tamux --skill imaging-data-commons-mkurman
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: imaging-data-commons
Source: https://github.com/mkurman/tamux/tree/main/skills/scientific-skills/imaging-data-commons
Command: npx skills add https://github.com/mkurman/tamux --skill imaging-data-commons-mkurman

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

Enable researchers and data scientists to discover and retrieve public IDC imaging data efficiently using idc-index, eliminating manual search friction and authentication barriers.

Core Features & Use Cases

  • Query IDC index metadata to filter by collection, modality, body part, and licensing
  • Download DICOM data in structured directories with configurable templates
  • Visualize data previews in browser and verify licenses before use
  • Batch and reproducible workflows with query results saved as manifests

Quick Start

Query the IDC index for chest CT series in a chosen collection and download the results to your local directory.

Frequently Asked Questions about imaging-data-commons

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I download DICOM imaging data without authentication?

You can download DICOM imaging data without authentication by querying the IDC index with idc-index, which retrieves publicly available radiology and pathology datasets directly to structured local directories.

Can I filter IDC imaging datasets by modality and body part?

Filtering IDC imaging datasets by modality and body part is supported. You can query the IDC index metadata to narrow results by collection, modality, body part, and licensing before downloading.

What is the best way to query public radiology data for batch workflows?

The best way to query public radiology data for batch workflows is using idc-index to filter IDC collections and save query results as manifests, ensuring reproducible data retrieval across pipeline runs.

Does idc-index support visualizing DICOM data previews in a browser?

idc-index supports visualizing DICOM data previews in a browser. You can browse queried IDC imaging data in a viewer to verify content before downloading the files.

How do I check licensing for IDC datasets before downloading?

To check licensing for IDC datasets before downloading, query the IDC index metadata to filter by license and verify the data usage terms associated with each collection.

What IDC data version does idc-index 0.11.10 target for reproducible queries?

idc-index 0.11.10 targets IDC data version v23 for compatibility and reproducibility, ensuring that queries and downloaded DICOM data remain consistent across environments.