imaging-data-commons

Query and download IDC imaging datasets via idc-index.

Updated Aug 27, 2026
One-click install
npx skills add https://github.com/must1f/Dissertaion-Project --skill imaging-data-commons-must1f
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: imaging-data-commons
Source: https://github.com/must1f/Dissertaion-Project/tree/main/.agents/skills/imaging-data-commons
Command: npx skills add https://github.com/must1f/Dissertaion-Project --skill imaging-data-commons-must1f

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

IDC data discovery and acquisition can be slow and manual; this Skill enables querying and downloading public IDC imaging datasets (radiology and pathology) via the idc-index client, with visualization and licensing checks to ensure compliant use.

Core Features & Use Cases

  • Discover IDC datasets across multiple buckets using idc-index, including CT, MR, PET radiology data and slide microscopy.
  • Download DICOM data directly from IDC cloud storage with reproducible organization, versioning, and licensing visibility.
  • Visualize data in browser viewers and integrate with clinical workflows using available guides for clinical and BigQuery workflows.
  • Export identifiers and manifests to reproduce analyses and training pipelines.

Quick Start

Run an IDC search for a CT chest series using idc-index and download the results to a local folder.

Frequently Asked Questions about imaging-data-commons

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I download DICOM imaging datasets from the cloud?

You can download DICOM imaging datasets by using the idc-index client to query and retrieve data directly from public IDC cloud storage with reproducible organization. This allows compliant acquisition of radiology and pathology series.

How do I query public IDC radiology and pathology data?

You can query public IDC radiology and pathology data using the idc-index client to discover datasets across multiple cloud buckets. This search covers CT, MR, PET, and slide microscopy series.

Can I integrate IDC imaging data with clinical workflows using BigQuery?

Yes, you can integrate IDC imaging data with clinical workflows using available guides for BigQuery workflows and clinical_data. This enables advanced clinical data integration alongside your queried DICOM datasets.

What do I need to start querying and downloading IDC imaging data?

To start querying and downloading IDC imaging data, you need the idc-index client installed and internet access to IDC. You must also adhere to dataset licensing terms during data discovery and acquisition.

Does idc-index support checking data licenses for public imaging datasets?

Yes, idc-index supports checking data licenses for public imaging datasets to ensure compliant use. This licensing visibility is integrated directly into the data discovery and download workflow.

What are the limitations of downloading DICOM data using idc-index?

Limitations of downloading DICOM data using idc-index include the strict requirement for internet access to IDC and mandatory adherence to specific dataset licensing terms. Reproducible workflows depend on exporting identifiers and manifests.