isabl-debug-analysis

To debug a failed Isabl bioinformatics workflow, retrieve the analysis metadata and inspect the head_job.sh script and head_job.log files to locate the exact failure cause. You can validate inputs and settings to propose corrective actions for re-running the analysis.

The best way to inspect Isabl analysis logs for errors is to parse the analysis metadata and review the head_job.log and head_job.err files. This step-by-step verification reveals script failures and unexpected behavior across projects.

Your Isabl analysis shows a FAILED status due to script errors, invalid inputs, or incorrect settings. Diagnose the exact cause by parsing the analysis metadata and reviewing the head_job.sh and head_job.log files to guide corrective actions.

You can diagnose unexpected behavior in Isabl analyses across different projects by collecting status, application, and targets metadata. This allows step-by-step verification of scripts, inputs, and settings to identify and fix the root cause.

To verify inputs and settings before re-running a failed Isabl analysis, inspect the command scripts and log files like head_job.sh. Validating these components ensures you can propose actionable fixes for a successful re-run.