isabl-merge-results

Merge results from multiple Isabl analyses into a single dataset.

3|3|Updated Feb 3, 2026

Search Tags:#analysis #data #merge #cohort #isabl #mutect

Ready to run

npx skills add https://github.com/juanesarango/isabl-mcp --skill isabl-merge-results

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: isabl-merge-results
Source: https://github.com/juanesarango/isabl-mcp/tree/main/skills/isabl-merge-results
Command: npx skills add https://github.com/juanesarango/isabl-mcp --skill isabl-merge-results

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

The skill aggregates results from multiple Isabl analyses into a single merged dataset, enabling researchers to compare samples and cohorts in one place.

Core Features & Use Cases

Identify target analyses and collect results paths across projects
Validate file existence, choose merge strategies (concat, join, or custom), and perform the merge
Produce merged outputs (TSV/CSV, VCF, or summary tables) and quick validation reports
Use Case: Merge mutation data from several MUTECT analyses to generate a cohort-level mutation summary

Quick Start

Provide the target analyses and run the merge workflow to generate a consolidated results file.

Frequently Asked Questions about isabl-merge-results

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I merge VCF and TSV results from multiple Isabl analyses into one dataset?▼

To merge VCF and TSV results from multiple Isabl analyses, you aggregate them into a single consolidated dataset by inspecting target analyses, collecting result paths, validating file existence, selecting a merge strategy, and saving the merged output.

What is the best way to consolidate mutation data from several MUTECT analyses for a cohort?▼

Consolidating mutation data from several MUTECT analyses requires aggregating results across samples or cohorts into a cohort-level mutation summary, enabling researchers to compare outputs in one place using a chosen merge strategy.

Can I use different merge strategies when combining Isabl analysis outputs?▼

Yes, you can select from concat, join, or custom merge strategies when combining Isabl analysis outputs, allowing you to produce merged TSV, CSV, VCF, or summary tables tailored to your specific cohort comparison needs.

Does the Isabl merge process validate file existence before combining analysis results?▼

Yes, the Isabl merge process validates file existence before combining analysis results, ensuring that collected result paths across projects are inspected and confirmed to prevent missing file errors during the consolidation workflow.

Do I need any external dependencies to aggregate Isabl results across projects?▼

No external dependencies are required to aggregate Isabl results across projects, as the consolidation workflow operates independently to inspect analyses, collect paths, execute the merge, and generate validation reports.