Query KEGG REST endpoints for pathway, gene, and compound data.
npx skills add https://github.com/rubensliv/k-dense-ai --skill kegg-database-rubensliv
Please help me install this Agent Skill. Skill: kegg-database Source: https://github.com/rubensliv/k-dense-ai/tree/main/scientific-skills/kegg-database Command: npx skills add https://github.com/rubensliv/k-dense-ai --skill kegg-database-rubensliv
KEGG REST data access enables researchers to programmatically retrieve pathways, genes, compounds, and cross-database links for reproducible analyses and rapid hypothesis testing.
Query KEGG REST endpoints via the provided Python helper to obtain pathway data or conversions in a reproducible script.
High-intent search queries and answers about installing and using this skill.
Retrieve KEGG pathway and gene data by querying KEGG REST endpoints through a Python helper, which executes HTTP requests to fetch specific biological sequences and mappings for academic research workflows.
Yes, convert gene IDs across databases using the KEGG conv operation, which translates external identifiers into KEGG identifiers to facilitate cross-database data integration and analysis.
Map a list of genes to biological pathways by utilizing the KEGG link operation, which cross-references gene entries against pathway databases to generate structured pathway mapping outputs.
Yes, the KEGG REST helper handles HTTP request errors and enforces iteration limits automatically, ensuring stable bioinformatics data retrieval without exceeding API rate constraints during pathway exploration.
Find specific compounds or drugs in the KEGG database by executing the KEGG find and ddi operations, which search for chemical compound entries and inspect drug interactions programmatically.
Use KEGG REST endpoints instead of manual downloads when you need to automate bioinformatics workflows, programmatically fetch organism pathways, or integrate cross-database conversions into reproducible analysis scripts.
felixboehmProvides Python-based access to the KEGG REST API for pathway, gene, compound, and drug interaction queries.
Imad-OuteFetch KEGG pathway, gene, and molecular interaction data via REST API.
yf8578Query the KEGG REST API for biological pathways, genes, and compounds.
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