Query KEGG pathways, genes, compounds, and drugs via the REST API.
npx skills add https://github.com/yf8578/clawomics --skill kegg-database-yf8578
Please help me install this Agent Skill. Skill: kegg-database Source: https://github.com/yf8578/clawomics/tree/main/skills/kegg-database Command: npx skills add https://github.com/yf8578/clawomics --skill kegg-database-yf8578
This Skill provides direct access to the KEGG database, enabling users to query biological pathways, gene-pathway mappings, metabolic networks, and drug interactions programmatically.
Use the kegg-database skill to find all human pathways associated with the gene TP53.
High-intent search queries and answers about installing and using this skill.
To map genes to KEGG biological pathways, this Skill queries the KEGG REST API to retrieve gene-pathway mappings across multiple organisms. It takes gene lists as input and returns associated metabolic, genetic, and cellular pathway information for bioinformatics workflows.
Yes, you can convert biological IDs between KEGG and external databases like NCBI or UniProt. This Skill utilizes the KEGG REST API to perform ID conversion, translating gene and compound identifiers across supported external databases for academic research.
The best way to retrieve drug interaction data from the KEGG database is by using this Skill to query the KEGG REST API. It programmatically accesses drug information, enabling users to extract specific drug-drug interaction data for pharmacological research.
Yes, the KEGG REST API access method supports querying metabolic pathways for specific organisms. This Skill retrieves detailed information about metabolic networks, disease pathways, and enzyme data across various organisms for biological pathway analysis.
To get detailed compound and reaction information for pathway analysis, this Skill uses Python scripts to interact with the KEGG REST API. It queries compound data and maps compounds to their corresponding reactions within metabolic pathways.
When using the KEGG REST API for high-throughput genomic data retrieval, limitations include potential rate limits and response times inherent to direct database querying. This Skill handles interactions via Python scripts but does not bypass external API constraints.
Yezez9Query KEGG REST API for pathways, genes, compounds, and ID conversion.
felixboehmProvides Python-based access to the KEGG REST API for pathway, gene, compound, and drug interaction queries.
felixboehmAccess over 40 bioinformatics web services through a unified Python interface.
K-Dense-AIQuery KEGG pathways, genes, compounds, and drugs via REST API endpoints.
