Fetch drug, pathway, and disease data from KEGG REST endpoints.
npx skills add https://github.com/PharMolix/OpenBioMed --skill kegg-query
Please help me install this Agent Skill. Skill: kegg-query Source: https://github.com/PharMolix/OpenBioMed/tree/main/skills/kegg-query Command: npx skills add https://github.com/PharMolix/OpenBioMed --skill kegg-query
KEGG stores data across multiple endpoints and formats, making it tedious to assemble comprehensive drug, pathway, and disease information for biomedical analyses. This skill provides a unified way to query KEGG and return structured results.
Query KEGG for the disease H00409 and print the parsed entry.
High-intent search queries and answers about installing and using this skill.
You can retrieve KEGG data by querying REST endpoints for drugs, pathways, and diseases, which returns structured JSON-like outputs including names, targets, and associated genes for downstream analysis.
Querying KEGG for drug discovery involves fetching DRUG entries with compound details and targets, while pathway analysis retrieves signaling and metabolism entries with associated genes and compounds.
Yes, querying KEGG DISEASE returns structured results that integrate disease associations and drug candidates, supporting biomedical research workflows and downstream tools.
No external dependencies or components are required to query KEGG REST endpoints; the skill includes built-in parsing routines to fetch data and return structured JSON-like outputs.
Fetching KEGG pathway entries retrieves signaling and metabolism pathways, returning structured results that include associated genes and compounds for pathway analysis workflows.
jimmc414Query KEGG REST API for pathways, gene mappings, and ID conversions.
felixboehmProvides Python-based access to the KEGG REST API for pathway, gene, compound, and drug interaction queries.
SologaQuery KEGG REST API for pathways, gene mappings, and ID conversions.
K-Dense-AIQuery KEGG pathways, genes, compounds, and drugs via REST API endpoints.
