knowledge-base

Query Pinecone-backed knowledge bases for SDTM domain guidance and validation rules.

Updated Aug 27, 2026
One-click install
npx skills add https://github.com/siddharthchauhan/ETL --skill knowledge-base-siddharthchauhan
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: knowledge-base
Source: https://github.com/siddharthchauhan/ETL/tree/main/sdtm_pipeline/deepagents/skills/knowledge-base
Command: npx skills add https://github.com/siddharthchauhan/ETL --skill knowledge-base-siddharthchauhan

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This skill centralizes authoritative CDISC guidance, validation rules, business rules, and terminology lookups from a Pinecone-backed knowledge base to accelerate accurate SDTM mappings and compliance checks.

Core Features & Use Cases

  • SDTM guidance lookup: Retrieve domain definitions, variable requirements, and mapping hints from SDTM-IG sources.
  • Terminology and codelist lookups: Access CDISC controlled terminology and coding for consistent data standardization.
  • Validation & business rules: Apply Pinnacle 21/FDA rules and domain-specific business logic during mapping and validation.
  • Web-assisted references: Augment results with web-based CDISC references for authoritative citations when needed.

Quick Start

Use the knowledge-base skill to fetch guidance for domain AE, including variable requirements and CT codes.

Frequently Asked Questions about knowledge-base

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I look up SDTM domain guidance and variable requirements during data mapping?

You can retrieve SDTM domain guidance and variable requirements by querying a Pinecone-backed knowledge base. This centralizes authoritative CDISC SDTM-IG sources to accelerate accurate domain mappings across AE, DM, VS, and LB.

What is the best way to access CDISC controlled terminology for codelist standardization?

Accessing CDISC controlled terminology involves querying the sdtmct Pinecone index. This allows you to retrieve specific CT codes and codelists to ensure consistent data standardization across SDTM domains.

How can I apply Pinnacle 21 and FDA validation rules to my SDTM datasets?

You can apply Pinnacle 21 and FDA validation rules by querying the validationrules and businessrules Pinecone indexes. This fetches domain-specific business logic and compliance checks during SDTM mapping and validation.

Do I need a Pinecone account and API keys to use this CDISC knowledge base skill?

Yes, you need a configured Pinecone account with API keys. The skill requires access to specific Pinecone indexes like sdtmig, sdtmct, and validationrules, along with an embedding model to function.

What SDTM domains are supported for cross-domain reference and terminology lookups?

The skill supports cross-domain reference tasks across SDTM domains such as AE, DM, VS, and LB. It retrieves applicable domain definitions, mapping hints, and controlled terminology for these areas.

Can I augment SDTM validation results with web-based CDISC references for citations?

Yes, SDTM validation and guidance results can be augmented with web-assisted CDISC references. This feature provides authoritative citations when needed to support compliance checks and domain mapping decisions.