kuramoto-brain-network

Analyzes brain network phase dynamics using Kuramoto oscillators to reveal synchronization patterns.

2|Updated Feb 12, 2026
One-click install
npx skills add https://github.com/hiyenwong/ai_collection --skill kuramoto-brain-network
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: kuramoto-brain-network
Source: https://github.com/hiyenwong/ai_collection/tree/main/collection/skills/kuramoto-brain-network
Command: npx skills add https://github.com/hiyenwong/ai_collection --skill kuramoto-brain-network

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Kuramoto-brain-network analysis provides a principled framework to study brain network phase dynamics and how neuromodulators affect synchronization patterns.

Core Features & Use Cases

  • Phase-dynamics modeling of brain networks with Kuramoto oscillators
  • Phase extraction from fMRI signals using Hilbert transform
  • Estimation of coupling strength from phase differences
  • Detection of functional communities via spectral clustering
  • Comparative analysis of conditions (e.g., oxytocin vs placebo)
  • End-to-end workflow for simulation, analysis, and interpretation

Quick Start

Run a Kuramoto-brain-network analysis on your neuroimaging data to compute phase coherence, coupling strength, and community structure.

Frequently Asked Questions about kuramoto-brain-network

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I analyze brain network phase synchronization from fMRI signals?

Brain network phase synchronization is analyzed by extracting phase from fMRI signals using the Hilbert transform, then estimating coupling strength from phase differences to reveal synchronization patterns.

What is the best way to model phase dynamics of brain networks with Kuramoto oscillators?

Modeling phase dynamics with Kuramoto oscillators provides a framework to simulate brain network synchronization, allowing you to compute phase coherence and detect functional communities via spectral clustering.

Can I use this approach to compare synchronization patterns under oxytocin versus placebo conditions?

Yes, you can compare synchronization patterns under oxytocin versus placebo conditions by running end-to-end workflows that estimate coupling strength and analyze functional community structure across different cognitive science experiments.

Do I need Python libraries like numpy and scipy to detect functional communities in brain networks?

Yes, you need Python libraries including numpy, scipy, networkx, and scikit-learn to perform phase extraction, coupling estimation, and spectral clustering for functional community detection in brain networks.

How does spectral clustering identify functional communities in brain network connectivity data?

Spectral clustering identifies functional communities by grouping brain regions based on phase coherence and coupling strength metrics, revealing the underlying synchronization structure of the brain network.

What are the limitations of using Kuramoto oscillators for neuroscience research?

Kuramoto oscillators simplify complex brain network phase dynamics into phase synchronization models, focusing on coupling estimation and community analysis rather than detailed neurophysiological simulations of individual neurons.