Track biological dataset and model provenance across local and cloud storage.
npx skills add https://github.com/jasrajtulsi/GRAD-SCOPE --skill lamindb-jasrajtulsi
Please help me install this Agent Skill. Skill: lamindb Source: https://github.com/jasrajtulsi/GRAD-SCOPE/tree/main/.claude/skills/lamindb Command: npx skills add https://github.com/jasrajtulsi/GRAD-SCOPE --skill lamindb-jasrajtulsi
LaminDB removes the manual overhead of making biological datasets, models, and analysis runs traceable, queryable, and reproducible. It helps you keep provenance, validation, and annotations connected so experiments do not become disconnected files and notebooks.
Ask the assistant to help you set up LaminDB for a biological data workflow, validate a dataset, and register it with lineage and ontology annotations.
High-intent search queries and answers about installing and using this skill.
Track scRNA-seq biological dataset lineage by registering artifacts, validating schemas, and logging inputs, outputs, parameters, and code to ensure full reproducibility across local and cloud storage.
Yes, you can validate AnnData, MuData, SpatialData, and TileDB-SOMA objects using schemas and ontology-backed metadata to standardize biological annotations like cell types.
LaminDB integrates with notebooks, scripts, Nextflow, Snakemake, MLflow, and Weights & Biases to record lineage and provenance for pipeline execution and model training workflows.
Prevent lost provenance in biological research workflows by registering datasets and models in an artifact registry that queries features, browses collections, and manages versioned storage.
Standardize cell types in single-cell RNA-seq data by applying ontology-backed curation with Bionty, saving validated artifacts with linked metadata for later retrieval by ontology terms.
Manual biological dataset provenance tracking creates disconnected files and notebooks, risking lost lineage, unvalidated annotations, and hard-to-reproduce analysis outputs across complex research workflows.
ovachieverQuery CZ CELLxGENE Census data with TileDB-SOMA filters for single-cell analyses.
dralkhOrganize and validate biological research data in LaminDB.
JosephWoodallManage, query, and track provenance for complex biological datasets.
crazymsnCoordinate biological data management with LaminDB for traceability and reproducibility.
