lammps-reaxff

Generate and validate annotated LAMMPS ReaxFF input scripts with QEq configuration.

124|25|Updated Feb 20, 2026
One-click install
npx skills add https://github.com/jinzhezenggroup/computational-chemistry-agent-skills --skill lammps-reaxff
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: lammps-reaxff
Source: https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/main/molecular-dynamics/lammps-reaxff
Command: npx skills add https://github.com/jinzhezenggroup/computational-chemistry-agent-skills --skill lammps-reaxff

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill enables researchers to set up, validate, and run reactive molecular dynamics simulations in LAMMPS using the ReaxFF potential, along with generating annotated input scripts and QEq configuration.

Core Features & Use Cases

  • LAMMPS + ReaxFF setup: generate input.lammps templates with pair_style reaxff and pair_coeff mappings, and configure QEq.
  • Ensemble and diagnostics: supports NVE/NVT/NPT ensembles, basic diagnostics and species analysis hooks.
  • Use Case: a user wants to run a short ReaxFF MD to study reactive event pathways in a CO/H system, with charges and QEq.

Quick Start

Run a guided ReaxFF MD template generation and review the input.lammps file, then customize for your data.

Frequently Asked Questions about lammps-reaxff

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I set up a LAMMPS ReaxFF simulation with QEq charge equilibration?

To set up a LAMMPS ReaxFF simulation, you need to generate an input script with pair_style reaxff, map atom types to elements in pair_coeff, and configure QEq. This requires a ReaxFF potential file, a data system file, and proper charge mapping for NVE/NVT/NPT ensembles.

What is needed to validate a LAMMPS ReaxFF force field and data file before running MD?

Validating a LAMMPS ReaxFF force field and data file requires ensuring the presence of the ReaxFF potential file, data system, and atom-type to element mapping. Proper input structure with QEq configuration must also be verified for reactive MD simulations.

How do I generate an annotated LAMMPS input script for reactive molecular dynamics?

You can generate an annotated LAMMPS input script for reactive molecular dynamics by using a template generation process. This creates a validated input.lammps file with pair_style reaxff and pair_coeff mappings, which you then customize with your specific data.

Can I run NVT and NPT ensembles using the ReaxFF potential in LAMMPS?

Yes, you can run NVE, NVT, and NPT ensembles using the ReaxFF potential in LAMMPS. The simulation setup supports these thermodynamic ensembles along with basic diagnostics and species analysis hooks for studying reactive event pathways.

Why does my LAMMPS ReaxFF simulation require an atom-type to element mapping?

A LAMMPS ReaxFF simulation requires an atom-type to element mapping to correctly apply the force field through pair_coeff. This mapping links your data file's atom types to the elements defined in the ReaxFF potential file, ensuring proper QEq and charge configuration.

What is the best way to study reactive event pathways in a CO/H system using LAMMPS?

The best way to study reactive event pathways in a CO/H system is by running a short ReaxFF molecular dynamics simulation in LAMMPS with charges and QEq. This involves generating an input template, mapping atom types to elements, and configuring the desired ensemble.