lib-bioservices
OfficialUnified Python interface to bioinformatics services.
Education & Research#python#bioinformatics#pathway analysis#sequence analysis#data retrieval#identifier mapping
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies complex bioinformatics data retrieval and analysis by providing a single, consistent Python interface to over 40 different web services and databases.
Core Features & Use Cases
- Cross-Database Queries: Seamlessly query multiple databases like UniProt, KEGG, ChEMBL, and Reactome in a single workflow.
- Identifier Mapping: Effortlessly convert IDs between different biological databases (e.g., UniProt to KEGG).
- Sequence Analysis: Perform tasks like BLAST searches and sequence alignments.
- Pathway Analysis: Discover and analyze metabolic pathways and gene functions.
- Use Case: Analyze a protein by retrieving its sequence from UniProt, finding similar proteins via BLAST, identifying its associated KEGG pathways, and discovering its interaction partners using PSICQUIC, all within one script.
Quick Start
Use the lib-bioservices skill to find pathways related to the human gene ZAP70.
Dependency Matrix
Required Modules
bioservices
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: lib-bioservices Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-bioservices Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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