lit-organizer

To organize literature notes into a coherent review, this process scores each paper by relevance, groups notes by subtopic, detects redundancy clusters, and generates a synthesized narrative output in articles/literature_organized.md.

Synthesizing academic research notes by subtopic involves assigning inclusion tiers to sources, identifying overlapping content clusters, and generating shortened summaries to produce a cohesive literature review document.

Yes, calculating relevance scores for a literature review requires a master skim file (paper_skims.md) and a notes corpus under articles/ to properly score papers and assign inclusion tiers.

Yes, you can detect redundancy across multiple paper notes by processing sources like split and scanned notes to identify redundancy clusters and flag gaps in your collected literature corpus.

A limitation when organizing a notes corpus is that the synthesis requires specific pre-existing source files such as articles/scanned_*/notes.md and a master skim file; without these structured inputs, it cannot generate the literature review.