literature-method-data-miner

Extract research methods and structured data from scientific papers.

2|Updated May 7, 2026
One-click install
npx skills add https://github.com/Teng-bio/codex-skills-hub --skill literature-method-data-miner
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: literature-method-data-miner
Source: https://github.com/Teng-bio/codex-skills-hub/tree/main/skills/local/literature-method-data-miner
Command: npx skills add https://github.com/Teng-bio/codex-skills-hub --skill literature-method-data-miner

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill automates the mining of research methods and data from papers, simplifying the process of extracting relevant information from academic literature.

Core Features & Use Cases

  • Literature Method Extraction: Identifies and extracts research methods from papers, including those mentioned in the literature review section.
  • Data Extraction: Pulls structured research data from figures, tables, captions, methods, results, supplemental files, and repository links.
  • Use Case: If a user is working on a research project and needs to gather methods and data from various literature sources, this skill can quickly provide a summary and structured data matrix for review.

Quick Start

To mine methods and data from a paper, run 'use literature-method-data-miner' followed by the title or DOI of the paper.

Frequently Asked Questions about literature-method-data-miner

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I extract research methods and data from academic literature?

To extract research methods and data from academic literature, provide a paper's title or DOI. It automatically identifies research questions, methods, and structured data from texts, figures, and tables.

Can I pull structured data from figures and tables in scientific papers?

Yes, you can pull structured research data from scientific papers. The skill extracts data from figures, tables, captions, methods, results, supplemental files, and repository links into a structured matrix.

What is the best way to compare research methods across multiple papers?

The best way to compare research methods across multiple papers is using this skill to generate a structured data matrix. It extracts bibliographic identity, research questions, and methods for quick synthesis and comparison.

Does the literature method extraction include methods mentioned in the literature review section?

Yes, literature method extraction includes methods mentioned in the literature review section. It scans the entire paper to identify and extract methods, data, and reproducibility details for research projects.

Do I need a DOI to mine methods and data from a paper?

No, you do not need a DOI to mine methods and data from a paper. You can run the skill using either the paper's title or its DOI to automatically extract the relevant academic findings and data.

What limitations exist when mining reproducibility details from academic papers?

A limitation when mining reproducibility details is that extraction depends on the paper's content. It focuses on identifying methods, data, and reproducibility details, but cannot extract information that is absent or unstated in the source text.