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marsseq

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Run MARS-seq preprocessing with confidence

Data & Analytics#bioinformatics#preprocessing#single-cell#nf-core#nextflow#rna velocity#marsseq
Authordanilomonge
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill removes the guesswork from running the nf-core marsseq pipeline by turning a samplesheet and a chosen output directory into a validated, reproducible single-cell preprocessing run.

Core Features & Use Cases

  • Runs the MARS-seq v2 preprocessing workflow for single-cell FASTQ data.
  • Supports release-pinned execution, parameter validation, and runtime provenance so runs are repeatable.
  • Includes RNA velocity support and release-specific documentation for users who need exact pipeline behavior.
  • Use it when preparing MARS-seq libraries, re-running a specific release, or debugging an engine compatibility issue.

Quick Start

Ask the Skill to run the marsseq pipeline for your samplesheet with a chosen output directory and profile.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: marsseq
Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#marsseq

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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